Plant MITE

SE4250144

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2912
Cajanus cajan
SE4250144
PIF/harbinger
To8
CcLG09:2234512-2234776
ATA
GGGTCTGTTTGGATAATCTTTTCCAAAAGCACTTCTAGGAGAGAAAAATAAAAAGGAAATTTGAAATAAATTTCTTCATAAGTTAAAACTAGCTTATGCATTTGTTAA

Secondary structure and sequence

TSD TIR

5'

3'

ATA    C  T    A   T            C    C               AA       TT               C       A   C            TT     AATTAAGA     AAGAAACCAAA
   GGGT TG TTGG TAA CTTTTCCAAAAG ACTT TAGGAGAGAAAAATA  AAGGAAA  TGAAATAAATTTCTT ATAAGTT AAA TAGCTTATGCAT  GTTAA        TTTTG           
   |||| || |||| ||| |||||||||||| |||| |||||||||||||||  |||||||  ||||||||||||||| ||||||| ||| ||||||||||||  |||||        |||||            
   CCCG GC AACC ATT GAAAGGGTTTTC TGAA ATCCTCTCTTTTTAT  TTCCTTT  GTTTTATTTAAAGAG TATTTGA TTT ATTGAATACGTA  CGATT        TATCT           
ATA    A  T    C   T            A    T               CC       TT               A       C   A            TT     -----AAA     TCAAGAGATGA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE4250144

ATAGGGTCTGTTTGGATAATCTTTTCCAAAAGCACTTCTAGGAGAGAAAAATAAAAAGGAAATTTGAAATAAATTTCTTCATAAGTTAAAACTAGCTTATGCATTTGTTAAAATTAAGATTTTGAAGAAACCAAAAGTAGAGAACTTCTATAAATTAGCTTATGCATAAGTTAATTTCAGTTTATAGAGAAATTTATTTTGTTTTTCCTTCCTATTTTTCTCTCCTATAAGTACTTTTGGGAAAGTTTACCCAATCGAGCCCATA

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