SE4220155

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2923
  • Cajanus cajan
  • SE4220155
  • Mutator
  • M13
  • Scaffold135370:314807-315043
  • ATTGGGGAT
  • GGGGATGGATT

Secondary structure and sequence

TSD    TIR
5'



3' 
      ATT           CAGATT    A      AAACAT        C           A         C    A    A   A    A                   AGAATAT      TGA
         GGGGATGGATT      CTCT ACTTTA      GAAAGTTA GGTAACTTAAT CATTTAAAC GTTA ATTT TAA AATG ATCAGATTGTGACACGTGT       ATATTT   
         |||||||||||      |||| ||||||      |||||||| ||||||||||| ||||||||| |||| |||| ||| |||| |||||||||||||||||||       ||||||    
         CCTTTACCTAG      GAGA TGAAAT      CTTTCAAT CCATTGAATTA GTAAATTTG CAAT TAAA ATT TTAT TAGTTTAACACTGTGCACA       TGTAAA   
TAGGGGTTG           ------    C      ACCTCC        A           C         A    C    C   A    C                   -------      TTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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