SE4250156

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2924
  • Cajanus cajan
  • SE4250156
  • PIF/harbinger
  • To42
  • Scaffold133762:215100-215233
  • TAA
  • GGGTGTGTTTGTTTTATCGTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TAA  -             A  -   CTAAC  T            --------T     A       ---AG   GA
   GG GTGTGTTTGTTTT TC GTT     TC GTTTAACTGAAT         TTTCC CTTTTTA     ACA  
   || ||||||||||||| || |||     || ||||||||||||         ||||| |||||||     |||   
   TC CACACAAACAAAA AG CAA     AG TAAGTTGACTTG         AGAGG GAAGAAT     TGT  
 AA  A             -  A   -----  -            CAGTTAGGT     -       GAAAA   AA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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