SE4210167

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2935
  • Cajanus cajan
  • SE4210167
  • Tc1/Mariner
  • St3
  • CcLG01:10445150-10445569
  • TA
  • TACTACCTCCGTTTCTATATATAAAACTCAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
      C   G       A     A        ACTTAATTCACCAA       AGTAGTTACTTTAGTTGATAACAATAAATTTATTTTATTTATATATATGTTTTTTTTTCTAAAACTACCCTAATACTACTTCTCTTTCCTAATTAATACTTATATATCTTTTAACTAATTAGAGTGCATGTCTTATATTATTTATCTCTCCTAATTAATACT
TACTAC TCC TTTCTAT TATAA ACTCAATT              AATTAAA                                                                                                                                                                  
|||||| ||| ||||||| ||||| ||||||||              |||||||                                                                                                                                                                  C
ATGATG AGG AAGGATA ATATT TGGGTTGA              CCTTGTT                                                                                                                                                                  
      A   A       A     C        -------------G       AACAAACAAGGAATATTTTCTGAGCTAAGTACAACAGAGTATATAATTAATAAAAATCTGATTTTATGAGGATTATTTTCACACAAAAGAATTAAACCATTTTACGTAATTAATATTTGAGAAATTTCTTATATGTGAAATGATGAACAAATGTTCTTTCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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