SE4220169

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2937
  • Cajanus cajan
  • SE4220169
  • Mutator
  • M12
  • CcLG11:36908229-36908445
  • TTTCCTAAA
  • AAAGGATAAAACTTAGGTATAATTTTTTAGATGC

Secondary structure and sequence

TSD    TIR
5'



3'
TTTCCT                                  AATT    T    --CCCTAATCAA    A  A        C    G   A   AAA   ATA      AGG
      AAAGGATAAAACTTAGGTATAATTTTTTAGATGC    GATG TGTT            AGTT GA TTTTACTT GGTA TAT CAT   TAT   TTAATG   
      ||||||||||||||||||||||||||||||||||    |||| ||||            |||| || |||||||| |||| ||| |||   |||   ||||||   C
      TTTCCTGTTTTGAATCCATGTTAAAAAATCTACG    CTAC ACAA            TCAA CT AAAATGGA CCAT ATA GTG   ATA   AATTAC   
AAATCC                                  ---C    C    AAAAATATAATC    C  C        A    A   C   AAC   ---      GTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End