SE4250171

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2939
  • Cajanus cajan
  • SE4250171
  • PIF/harbinger
  • To44
  • CcLG11:25648292-25648435
  • TTA
  • AGCGTGTTTGGATTATC

Secondary structure and sequence

TSD    TIR
5'



3' 
TTAG  C       GA  A  ATTT    TAACG       GAATTCTC    TCC       A      AGAA
    AG GTGTTTG  TT TC    AAAA     TAAACGG        ACGT   AAAGCAG AAAATG    
    || |||||||  || ||    ||||     |||||||        ||||   ||||||| ||||||     
    TC CACAAAC  AA AG    TTTT     GTTTGCC        TGCA   TTTCGTT TTTTAC    
ATTG  A       AA  C  -CAC    TCAAA       -GGCAACT    --C       G      AATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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