SE4250172

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2940
  • Cajanus cajan
  • SE4250172
  • PIF/harbinger
  • To1
  • Scaffold134755:12959-13142
  • TTA
  • AGAGCATCTGCAATGGGGGTTGCTTATAAGCAACTCCCTGTGCCACATCACTGCCAAATCAGCTCTGGCCCACTTTATGGGTTGCT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                                                           C                          AAAA
  AGAGCATCTGCAATGGGGGTTGCTTATAAGCAACTCCCTGTGCCACATCACTGCCAAAT AGCTCTGGCCCACTTTATGGGTTGCT    
  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||     
  TCTCGTAGACGTTACCCCCAACGAATATTCGTTGAGGGACACGGTGTAGTGACGGTTTA TCGAGACTGGGTGAAATACCTAACGA    
AT                                                           A                          ATTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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