SE1030010

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2951
  • Chlamydomonas reinhardtii
  • SE1030010
  • hAT
  • Hat5
  • chromosome_11:3426500-3427126
  • GGGTGGGC
  • GGGTGGGCCCACACGGGTATGACGCCGGTCTGGGAGAGGGGTCAAACG

Secondary structure and sequence

TSD    TIR
5'



3'
  G G G                          G        -C     GCACA      TT   T  CTTGGCCTTGTCGTCCGGTCCCCAAACTCCGGCTATAGGCACGGCCAACGTGGTCCCGGGCGGACGACACGGCCTAGACTGGTCTAGCTCGCGTGGCGTCCGGGGGATGCGTTCCGCCCAGCTTGGCACGGTCGGCGACGGTCGTCAGGCCGACCTCCGAATCAGCTACCAGCGTTCTACAAGTATCACCTTGATACTACAGAGACCTCAAATATTTTGTTTGCGGCCTATTCGGTGACGTCGCGGTGA
GG T G CCCACACGGGTATGACGCCGGTCTGG AGAGGGGT  AAACG     GCCTGG  ACC GC                                                                                                                                                                                                                                                         
|| | | |||||||||||||||||||||||||| ||||||||  |||||     ||||||  ||| ||                                                                                                                                                                                                                                                         A
CC G T GGGTGTGCCCATACTGCGGCCAGACT TCTCCCCG  TTTGC     CAGGTG  TGC CA                                                                                                                                                                                                                                                         
  G G G                          -        TT     ----A      --   A  AAGAGGTGCGAGCGCATCTGAATCGGAGGGAGAAAGTCCTTAACTGAATATACTGTATATTCCTACATTTTCAAACTGAGGGCAGCGTAAGACGCTCCCACCGACAGTGGTGTAAAGCGCTCCGTACGAAAGCGGTCCCAGCGTGAGAATTCGGGCCCTCGTACAAAGATCAGAGGAACGTACATACAAACTACTGCCGTTGTTATTAACCGTAGTTTCGCGCCATTAACGCGTCTAAACTCTTCGGAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End