SE0550001

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2966
  • Capsella rubella
  • SE0550001
  • PIF/harbinger
  • To1
  • scaffold_8:6574358-6574781
  • TTA
  • AGGGGGAGTTATTGGGAGATTGATTTTAAAAGA

Secondary structure and sequence

TSD    TIR
5'



3'
TT      A            T       A     GTTTGTGGATTTCAAAAG       AT          -----------------           ---    -    CTAAAATAATGTTTAACCA ATTTTTAGAGTTTAATAGATTCTTCATATGATAGACTCTACAAATCCTTATGATAATTGCAGTATTTTGAAAGTTGTTTTTAATGACTAAATAGGTAAGGAATCATTAA
  AGGGGG GTTATTGGGAGA TGATTTT AAAGA                  TTTAGAG  TTTAAGATTC                 TCAAAAAGATT   TGTT GATT                   G                                                                                                             
  |||||| |||||||||||| ||||||| |||||                  |||||||  ||||||||||                 |||||||||||   |||| ||||                   |                                                                                                              
  TCCCCC CAATAACCCTCT ACTGAAA TTTCT                  AAATCTC  AAATTCTAAG                 CCTAAGAATCT   AATG TTTT                   A                                                                                                             
AT      C            T       A     ----------------AA       --          ATAACAATAACCACATG           AAG    A    ------------------- GAGAACAATAAACACATACATAAAACATTAAGATAAATTTTAGGAAACAATAAGTTTTTCAACTCATAAATAACTAAAAGGTTAAGATAGTTTAAGATCACAATAACCA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End