Plant MITE

SE0510014

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_2979
Capsella rubella
SE0510014
Tc1/Mariner
St3
scaffold_2:4444856-4445105
TA
TACTCTCTCCGTTTCTAA

Secondary structure and sequence

TSD TIR

5'

3'

         C        TAAA          GGAATTTTTTTTTG        AG     --TTTT     -------T      T  -  ATGATTACTTTACTTTTTACTTTTCTCCACATGGCATGTTGT
TACTCTCTC GTTTCTAA    TTGATGTTTT              TTTCAAAT  ATTGA      GTAGA        TAAAAA TA AA                                          
||||||||| ||||||||    ||||||||||              ||||||||  |||||      |||||        |||||| || ||                                          T
ATGAGGGAG CAAAGATT    AACTACAAAA              AAAGTTTG  TAATT      CATTT        AATAAT TA TT                                          
         A        TTCA          --------ATTCTA        AA     CTTTTT     CAAAAATA      -  A  AAATATTAACAAACATCCATCTTTCTCTTTTATATTTGGTAA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0510014

TACTCTCTCCGTTTCTAATAAATTGATGTTTTGGAATTTTTTTTTGTTTCAAATAGATTGATTTTGTAGATTAAAAATTAAAATGATTACTTTACTTTTTACTTTTCTCCACATGGCATGTTGTTAATGGTTTATATTTTCTCTTTCTACCTACAAACAATTATAAATTAATTAATAAATAAAAACTTTACTTTTTCTTAATAAGTTTGAAAATCTTAAAAACATCAAACTTTTAGAAACAGAGGGAGTA

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