SE0530016

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2981
  • Capsella rubella
  • SE0530016
  • hAT
  • Hat3
  • scaffold_6:1982305-1982517
  • CAGGCACT
  • GCACTCAGGGGCGGAGGTATGG

Secondary structure and sequence

TSD    TIR
5'



3' 
CAG  A  -   G          T  -TAGA  --            TT   -CC   TAAACTTTCAAATTTGATGAATTTTTAGGAAAAAAATCAAATTGACCCTTGT
   GC CT CAG GGCGGAGGTA GG     GG  CATGAGGGTCAA  GAC   TGA                                                    
   || || ||| |||||||||| ||     ||  ||||||||||||  |||   |||                                                    A
   CG GA GTC CCGCCTCCAT CC     CC  GTACTCCCAGTT  TTG   AAT                                                    
TCA  -  C   A          -  TTTAG  TA            -T   TTT   ATTACTAATTAACACAATATTTTTTTTTAATATCCCCAGTTAACACAATATA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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