SE0550031

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2996
  • Capsella rubella
  • SE0550031
  • PIF/harbinger
  • To15
  • scaffold_135:3931-4291
  • TTA
  • AGGGGGTGTTATTGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             G   --------------    A --   --     GA      TT   GGTGGATTTTAAAGTTCAATAGCCATTAAATACAATTAAGATGGATTTGGTATGAAAGAGATGAAATCCTTTGAAAAGTGTTAGGATTGTGTTTGTACGTGTTTTAGATGTAAAATACATTAAAATCT
  AGGGGGTGTTATT GAT              GGAG A  TTT  TAAGG  TTTTAA  ACG                                                                                                                                
  ||||||||||||| |||              |||| |  |||  |||||  ||||||  |||                                                                                                                                 
  TCCCCCACAATAA TTG              CTAA A  TAC  AAAGT  TTTAGA  TCG                                                                                                                                
AT             G   GAACATAAAATTAA    - CC   AT     --      --   CAATAAATTGATACATAAAATTTTTGGTGTTATTTTAGACGACAATAACCTAAATTGTAAACAACCTACATAAAATTTCATAAAATTTTGTTCGCAATAAGTTAAAAGTTACCTAAAACAAAAGAAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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