SE0520033

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_2998
  • Capsella rubella
  • SE0520033
  • Mutator
  • M7
  • scaffold_7:9195696-9196368
  • ATGTTTCTA
  • GAACAATTCTTGGGTTCACCCCTAGGGGTGAACCTATCTCATTCACCCCCTCT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGTTTCTA   C                                             C   AAGG              --------TA          -C            TTAA   ---  TTTATCTTATTAATTACAAACTTTAAATTTTAACCACTATATTATTAACCTAAACTTAAATATAATTTAGTTTATTTATAAAATCTAAACCCTAAAGTACTAATTTATCAACCCAAACCAAAATATAATCTTGTTTAATTACAAAATCTAAACCATAACCACTATTTTGTCAACCCAAACCAAAATATAATTTCGTTTAATTACAAAATCTAAACCCTA
         GAA AATTCTTGGGTTCACCCCTAGGGGTGAACCTATCTCATTCACCCC TCT    TAACCAATCAAAAT          GCCATGTCAT  TAATTAAATGAA    AAT   AA                                                                                                                                                                                                                           
         ||| ||||||||||||||||||||||||||||||||||||||||||||| |||    ||||||||||||||          ||||||||||  ||||||||||||    |||   ||                                                                                                                                                                                                                            
         CTT TTAAGAACCCAAGTGGGGATCCCCACTTGGATAGAGTAAGTGGGG AGA    ATTGGTTAGTTTTA          CGGTACAGTA  AGATAAATTTTT    TAT   GT                                                                                                                                                                                                                           
ATCTTTGTA   T                                             -   ATTA              TATTATTGCA          AA            ----   TTA  TTTAATTTTAGTATTTTATTTTGTTTAATTCCTTTGTTTAAGACATCCTAAAAATAAATCCTTTAAAATAAACCAAACCCAAATATTTTATTACCAATCCCAAATCTAAAATATTTATCTACTTAAATAAAAAAACAAACCCAAATATTTATCACCAATCCCAAATATAAAAGATTTATTTGTTTTAATATAAAGCCAAACCCAACTATTTTATCATCA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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