SE0530035

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3000
  • Capsella rubella
  • SE0530035
  • hAT
  • Hat5
  • scaffold_8:8559252-8559474
  • ACACTGTT
  • ACACTGTTCAGAGCCG

Secondary structure and sequence

TSD    TIR
5'



3' 
    C   T           CAAAGGCCAAGCCCATGAAACATATGCTTGCGGCCCTTCCTTTTATATAGTATTTTCGGCCCTATTTTTTCAAAAAGATTCTTTAGTGTAGT
 ACA TGT CAGAGCCGGCC                                                                                            
 ||| ||| |||||||||||                                                                                            G
 TGT ACA GTCTCGGCAGA                                                                                            
T   C   -           GATACGATTCCTTCCAATGTTCGTTTAATTTTTATTACCGACGAATATCCGGAGCTTGAACACTGGAGATTGGGTACTTCTTTCCAATTATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3