Plant MITE

SE0550036

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3001
Capsella rubella
SE0550036
PIF/harbinger
To16
scaffold_1:9754254-9754621
TAT
GGCCTTGAATGGAAGGGCAGATTAAAGCCAGATTAAAAGCAGAT

Secondary structure and sequence

TSD TIR

5'

3'

TAT   C         ---------------            A  -----------------    T           AATACACAC   --- T   AACTGTTATTTTTTCTCCATTCACACAAAATTAATATAATGGCAGTTCAAAAAAGAAAATATTACTAAAAAATAATTGATCTGCTAGCAGATCAAATATAAGAAG
   GGC TTGAATGGA               AGGGCAGATTAA GC                 CAGA TAAAAGCAGAT         AAT   G GAG                                                                                                         
   ||| |||||||||               |||||||||||| ||                 |||| |||||||||||         |||   | |||                                                                                                         G
   CCG AACTTACCT               TCTTGTCTAGTT CG                 GTCT GTTTTCGTCTA         CTA   C GTA                                                                                                         
TAT   A         CTATTATTTATACCG            -  TCAATTTTATATGGGTC    T           ----ATCGT   TAC -   TAATTTACGTCTAGTTTAAAATAATTATAAAATAATTTTTTTCGTCAAGTAAATTTTTGTGAGGTTTAGAGGTCGAAAAAATGACAAGTATCACGTTATGTTATA

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550036

TATGGCCTTGAATGGAAGGGCAGATTAAAGCCAGATTAAAAGCAGATAATACACACAATGTGAGAACTGTTATTTTTTCTCCATTCACACAAAATTAATATAATGGCAGTTCAAAAAAGAAAATATTACTAAAAAATAATTGATCTGCTAGCAGATCAAATATAAGAAGGATATTGTATTGCACTATGAACAGTAAAAAAGCTGGAGATTTGGAGTGTTTTTAAATGAACTGCTTTTTTTAATAAAATATTAATAAAATTTGATCTGCATTTAATATGCCATATCTGCTAATCTGCTTTTGTTCTGCTGGGTATATTTTAACTGCTTGATCTGTTCTGCCATATTTATTATCTCCATTCAAAGCCTAT

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