SE0550038

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3003
  • Capsella rubella
  • SE0550038
  • PIF/harbinger
  • To17
  • scaffold_8:4275235-4275587
  • TAA
  • GGGGGGTTATTGG

Secondary structure and sequence

TSD    TIR
5'



3' 
 TAA             ----    TTGATTTTGATGGATTTGGAAATCCAAACAAAAATCCTATGTTATTCAATCATTGATTTTAAAATAACTATCAAAATCATGTGTTATTGGTTGTATGATTTATAAATACTAGTTAAAATCCAATGTTATTCGTTTAGTGATTTGTTTTTGGATT
    GGGGGGTTATTGG    ATCA                                                                                                                                                          
    |||||||||||||    ||||                                                                                                                                                           
    CCCCCCAATAACC    TCCT                                                                                                                                                          
AATC             AATA    AAACATTTAGGTGGATCTTAAACATTTAGGAATAATAAATATTTTAGTTTTATGTACCTAAAACTTTATTGTACAAAATAGGAACCTAAACTTAGGAAGATAAAATGAGATAGTTTAGGAAAGTTTAGGTAAATTTTGTATGACGCCTAAAATT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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