SE0550040

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3005
  • Capsella rubella
  • SE0550040
  • PIF/harbinger
  • To18
  • scaffold_2:3502485-3502624
  • TAA
  • AGACCAACATTATTGCAAGGTTCTTAAAACCGAAAATGGGTATCTTAGCACAGTGTTTTGTATCTT

Secondary structure and sequence

TSD    TIR
5'



3'
TA  AC                                                              AT
  AG  CAACATTATTGCAAGGTTCTTAAAACCGAAAATGGGTATCTTAGCACAGTGTTTTGTATCTT  
  ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   
  TC  GTTGTAATAACGTTCCAAGAATTTTGGCTTTTACCCATAGAATCGTGTCACAAAACATAGAA  
AA  CC                                                              TA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End