SE0550041

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3006
  • Capsella rubella
  • SE0550041
  • PIF/harbinger
  • To19
  • scaffold_2:2045040-2045294
  • AAA
  • GGGTGGAAATGGTTGCACAA

Secondary structure and sequence

TSD    TIR
5'



3' 
AAA     G              -----AAA    T  GTTGGAAAAGAATAAGTTGAATAAAAAAATTTGAATAACATTCAACCTATTCATCTGCAAAATAGGAGATGAATGAGTTAACAACTGTATAA
   GGGTG AAATGGTTGCACAA        TGAA GA                                                                                            
   ||||| ||||||||||||||        |||| ||                                                                                            T
   CCCAC TTTACCAACGTGTT        CAAC TT                                                                                            
AAA     G              AAATTCTC    -  TTTTTAATAAGTTGATCAAAAATGGTAAACTCAACTTCTCCAACCTTTTTAATAAGTTGAGCAAGTTGAATTGTTTAACTTTTTTACTTGAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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