SE0550045

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3010
  • Capsella rubella
  • SE0550045
  • PIF/harbinger
  • To15
  • scaffold_4:12377065-12377425
  • TTA
  • AGGGGGTGTTATTGGAT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT             G   --------------    A --   --     G    ----   TT CAGGTGGATTTTAAAGTTCAATAGCCTTTAAATACAATTAAGATGGATTTGGTATGAAAGAGATGAAATCCTTTGAAAAGTGTTAGGATTGTGTTTGTACGTGTTTTAGATGTAAAATACATTAAAA
  AGGGGGTGTTATT GAT              GGAG A  TTT  TAAGG ATTT    TAA  A                                                                                                                               
  ||||||||||||| |||              |||| |  |||  ||||| ||||    |||  |                                                                                                                               T
  TCCCCCACAATAA TTG              CTAA A  TAC  AAAGT TTTA    GCA  A                                                                                                                               
AT             G   GAACATAAAATTAA    - CC   AT     -    GATC   -- TAAATTGCTACATAAAATTTTTGGTGTTATTTTAGACGACAATAACCTAAATTGTAAACAACCTACATAAAATTTTATAAAATTTTGTTCGCAATAAGTTAAAAGTTACCTAAAACAAAAGAAATTC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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