SE0550047

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3012
  • Capsella rubella
  • SE0550047
  • PIF/harbinger
  • To7
  • scaffold_1:4842285-4842492
  • TTA
  • AGAGCACCTCCAATG

Secondary structure and sequence

TSD    TIR
5'



3' 
TT               -----  --     CCATTGGAGGGTGCTAATCAATTTTTAAAAATTAAATTTTCAAAAATAGTGCTTATGTGTTGCTTATAATCACAAC
  AGAGCACCTCCAATG     GT  AAGCA                                                                            
  |||||||||||||||     ||  |||||                                                                            T
  TCTCGTGGAGGTTAC     CG  TTACA                                                                            
AT               CTCTA  AA     TAGAAATTGTAACGAATAGTAATATACATTACTAATATTAGTATTTTTTTCTTTTATAACATTCGTGGTATCCAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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