SE0550048

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3013
  • Capsella rubella
  • SE0550048
  • PIF/harbinger
  • To8
  • scaffold_1:11827486-11827623
  • TAA
  • AGGGCATCCTCAATGCAAGCATCTTAGGGAGTACCTTACCCTAAGATTTGCAAAGAGAATATCTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G           C             A                            AT     AT
  AGG CATCCTCAATG AAGCATCTTAGGG GTACCTTACCCTAAGATTTGCAAAGAGA  ATCTT  
  ||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||||||  |||||   
  TCT GTAGGAGTTAT TTCGTAGAATTCC CATGGAATGGGATTTTAAACGTTTCTCT  TAGAA  
AA   G           A             C                            CT     TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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