SE0530052

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3017
  • Capsella rubella
  • SE0530052
  • hAT
  • Hat7
  • scaffold_2:10181419-10182144
  • GAAAAAAA
  • TAGGCCTGGGC

Secondary structure and sequence

TSD    TIR
5'



3' 
GAAAAAAA           ATAA       ATCCGAAAACC  AACCGAACCGAACCGAAAAAATTGGATTAAAACCGAACCGATATTGGAAAAATAACCGATCGGTTGTTAGCTTTCATTATTTTTGGATATCGGATTAAACCCGATCCAAACCGATATCCAATAGATATCCATATATAACCGAACTTATAATATATACTTTAATATATCTAGGATATATACAATATATACTTTAATATCTTTAGGATATATACGTTTGCCGCATATCGGATTAAAAATTATTTTTAATTGATTTAGGATGTCACTGAATTTTGCTACTTTTTCATTAGGAATTTATGGTTTAGTTTGGTTTATTTAAAGATTTTATGC
        TAGGCCTGGGC    AATCCGA           CG                                                                                                                                                                                                                                                                                                                                       
        |||||||||||    |||||||           ||                                                                                                                                                                                                                                                                                                                                        
        ATCCGGACCCG    AAGCCTA           TA                                                                                                                                                                                                                                                                                                                                       
AAAAAAAG           ---C       -----------  GCCTAGCCCAAGCCAAGCCTAAAAAGCCAAAAGCCTAAAAAACCTATAACTAAGATTGTAGGTAAGCCTATAAATATTTTAAGCCAAGCCAAAGCCAAACTTATAAAGCCTAAAGCCAAGCCAAACCTATATTAACACTATTAATTTAAAATTGGTTTTAAATAACCTAAGCCAAAATAAGCCTATAAAAATTTAGGTTAATATGAGTTTATTAGGTATGATAGGTTCATATATTTTTTTATCTTTACTCCGTTTACTGTTCAAGTTTCTTGGTTGATTGTATTATGGTATGGTTATATATTTTAGCTTCGTATTTTGACACAGCTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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