Plant MITE

SE0550054

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3019
Capsella rubella
SE0550054
PIF/harbinger
To17
scaffold_4:2679286-2679636
TTA
TAGGGGGGTTATTGGTTTATGGATTTGTAAATCCA

Secondary structure and sequence

TSD TIR

5'

3'

T               T  ----------         T       CCTAG   TTGT       TATTAT    GA     AAATACAT         AATAACATGTTTTATCCTTGGATTTGAATCCTTCTATTTTACACTATCAAATTATTTCAAATTCATTTAAAACATACTGCTGATTTTAAA
 TAGGGGGGTTATTGG TT          ATGGATTTG AAATCCA     AAT    GAATCCT      TTAT  AATCA        GGATTTTGA                                                                                          
 ||||||||||||||| ||          ||||||||| |||||||     |||    |||||||      ||||  |||||        |||||||||                                                                                          A
 ATTCCCCCAATAACC AG          TACCTAAAC TTTAGGT     TTG    TTTAGGA      AATA  TTAGT        ACTAAAATT                                                                                          
                T  TAACTAAAAC         C       -----   --TT       ---TAC    AG     -------A         TTATTGATAGTTTTAGTACAGAATAACCAACATACTAAATATTTATGATCAATTTTAGTATACAATAAGCAAATCACTAAACAAAAGCCT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550054

TTAGGGGGGTTATTGGTTTATGGATTTGTAAATCCACCTAGAATTTGTGAATCCTTATTATTTATGAAATCAAAATACATGGATTTTGAAATAACATGTTTTATCCTTGGATTTGAATCCTTCTATTTTACACTATCAAATTATTTCAAATTCATTTAAAACATACTGCTGATTTTAAAATCCGAAAACAAATCACTAAACGAATAACATATGATTTTAACTAGTATTTATAAATCATACAACCAATAAGACATGATTTTGATAGTTATTTTAAAATCAATGATTGAATAACATAGGATTTTTGTTTGGATTTCCAAATCCATCAAAATCAATGATCCAATAACCCCCTTA

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