SE0530055

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3020
  • Capsella rubella
  • SE0530055
  • hAT
  • Hat2
  • scaffold_6:15772261-15773053
  • ATCAAAGC
  • TAGGCATGTCAATT

Secondary structure and sequence

TSD    TIR
5'



3' 
ATCAAAGC              A      AA  CCGCGTGCTAGTTTGGTCCGTTCCTGAAAAATATCGGGGTCGGACTTAAATATATATGTCCAGAAAAAACCGGGTTTTTGGGCTAATCCCATACGGATTAAAGGATTTTTTGGGCTTAGCCCGGTCGGGCTCGGGCCGGCCCGAAAGCCCTTAAACAAATATATTTTTAATTTTTTAATATTTAAGTTTGATTAAAAGATTTGATTAATGTTATAGTTTTCATATTTACTTACTAGCCTTACTTATTATTTTTAAAATCTTTATCTATAATATTTTCTCTTATTTATATATGTCAGAACTGAACAAAGCTAAAACTAAATATATATAAGTATCATGATTTTGAAATCATCAAAATATATATTAAA
        TAGGCATGTCAATT GAGCTA  GC                                                                                                                                                                                                                                                                                                                                                                             
        |||||||||||||| ||||||  ||                                                                                                                                                                                                                                                                                                                                                                              
        ATCCGTACAGTTAG CCCGAT  CG                                                                                                                                                                                                                                                                                                                                                                             
CGAAACTA              -      --  GGCCGGGCCGGGCCGGGCTTTGGGCATTTCGGGAGTATATGCACTCGGGCCGGGCCGGGCCGGGTTTTTTAAAGGCTCGGATATAAACTTTCGGGCCGGGCCAGGATTGTCCCAATGTCCCGAAAAGCCCGAAAAAACCCGAAATGAATGGCTATTTTTTAGTTAAAGTTTCAAGTATTATCATAAAGTTTTTGATATAAATTTCCAGATGATATTTTTATTACGTAGTTTAAAATTTATTGAATAGTTATAAGTTATTTTGATTGAATTAAATTCTCTTTTTTATTTTCGGTTTATTTAATAAATGTGAAATTGGGTTATTTTGTACCTTGATTTTATGAAATTTCATATACTATCTCAGTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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