SE0520057

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3022
  • Capsella rubella
  • SE0520057
  • Mutator
  • M9
  • scaffold_3:10939914-10940484
  • GACTATAAC
  • TATAACGGGAAAATAGCAAAAATCAACCCCGAGTATTTACTGGCGGTATTTTCATACCCAAACTACGATACCCCGCAAATAGCAACCTAAACACACAAAAATTCAAATTCTCAACCTAAACTATATGAAATCAGCCAAAATGAACATATATCAAAATGGTGCTAGTTAACCACTTAACGGCGCTGAGTTAGCCGACACCGTGGCAATGACAGGATAT

Secondary structure and sequence

TSD    TIR
5'



3'
GAC    -A G                   C  C  G A   A             C                 C  C            C     A       -A                                        G         CA     G  C              A     C        C           C    A A      CAAA     G                C       T   -A    A         TTCGATG      TGC
   TATA  C GGAAAATAGCAAAAATCAA CC GA T TTT CTGGCGGTATTTT ATACCCAAACTACGATA CC GCAAATAGCAAC TAAAC CACAAAA  TTCAAATTCTCAACCTAAACTATATGAAATCAGCCAAAAT AACATATAT  AAATG TG TAGTTAACCACTTA CGGCG TGAGTTAG CGACACCGTGG AATG C GGATAT    GTTGA TAATATGACGTCGTTT GTGAGTT AGG  TTTC AATTGAAGA       AGTGTT   
   ||||  | ||||||||||||||||||| || || | ||| ||||||||||||| ||||||||||||||||| || |||||||||||| ||||| |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||  ||||| || |||||||||||||| ||||| |||||||| ||||||||||| |||| | ||||||    ||||| |||||||||||||||| ||||||| |||  |||| |||||||||       ||||||    
   ATAT  G CCTTTTATCGTTTTTAGTT GG TT A AAA GACTGCCATAAAA TATGGGTTTGATGCTAT GG TGTTTATCGTTG ATTTG GTGTTTT  AAGTTTAAGAGTTGGATTTGATATACTTTAGTCGGTTTTA TTGTATATA  TTTGC AC ATCAATTGGTGAAT GCCGC ACTCAGTT GCTGTGGTACC TTAC G CTTGTA    CAACT ATTATACTGCAGCAAA CACTCAA TCC  AGAG TTAGTTTCT       TTACGA   
 CA    CA G                   A  T  G A   C             A                 A  C            A     A       AA                                        G         -A     G  A              A     T        A           A    A C      AACA     G                -       T   CA    C         -------      TTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End