SE0530059

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3024
  • Capsella rubella
  • SE0530059
  • hAT
  • Hat9
  • scaffold_7:16866915-16867128
  • TGTACATC
  • TGTACATCCAGGGGCGGACCCAGAAAAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
        TC              ----       TATTAAA -     CAAAAAGGTAGCACATATGACTTGAACCCACAACCTTAAACATTATATGGGGGCAGTTTAACCAT
  TGTACA  CAGGGGCGGACCCA    GAAAAAA       T GGGTG                                                                 
  ||||||  ||||||||||||||    |||||||       | |||||                                                                  
  ACATGT  GTCCCCGCCTGGGT    CTTTTTT       C CCCAT                                                                 
CT      --              GTAT       -----CA T     CAACGTGGGTGGTTGGATAATTTTTGATTTTTAAAATGTAATTTTAATTTCAACATTCACAGTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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