SE0550063

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3028
  • Capsella rubella
  • SE0550063
  • PIF/harbinger
  • To13
  • scaffold_2:6854700-6854866
  • TAA
  • AGAGCATAATTATTGGTAGGTTTTTAGTAAAATCTTAGGCTAAAAAAGTTAAGAAAAG

Secondary structure and sequence

TSD    TIR
5'



3' 
TA   G   A        TA       -  T   A           -      ----------         GTAAAAGAA       AT
  AGA CAT ATTATTGG  GGTTTTT AG AAA TCTTAGGCTAA AAAAGT          TAAGAAAAG         GTCTCTT  
  ||| ||| ||||||||  ||||||| || ||| ||||||||||| ||||||          |||||||||         |||||||   
  TCT GTA TAATAGTT  CCAAAGA TC TTT AGAATTCGATT TTTTCA          ATTCTTTTC         CAGAGAA  
AA   G   C        -C       A  T   G           C      CTACTTTTTG         AATTATATA       CG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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