SE0530065

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3030
  • Capsella rubella
  • SE0530065
  • hAT
  • Hat10
  • scaffold_2:2002166-2002836
  • GTTATTAT
  • ATCTAGGTTGCATGGAAAC

Secondary structure and sequence

TSD    TIR
5'



3' 
GTTATT     G             -------    ---    ATACG  GAAACGAAACGTTTCGGAAACGGGAAACGACAATTTTTGAAAATTAAGGAATGGAAACGTTTTGGAAACGTATGTATATATAATTATATATATATATACTAAAATTCCAAATATAAAATCCATATTAAAAAAAAAAGAATTTTTGAAAACATAAATACTAAATAGTTAAACAAAACTCTAAAACATAATACTAAAACGCTCAAATTCAAATGTTTGGACCAACATCGCCGTTATCATTTTTATCAAATAAAACAGCCTCTAAATCAGGTTCGTCTAGAGAAAGATCTTCAGAC
      ATCTA GTTGCATGGAAAC       GGAA   ACAC     CG                                                                                                                                                                                                                                                                                                     
      ||||| |||||||||||||       ||||   ||||     ||                                                                                                                                                                                                                                                                                                      
      TGGAT CAATGTACCTTTG       CTTA   CAAA     GG                                                                                                                                                                                                                                                                                                     
TATTAT     G             AGAAAAG    ACG    -----  GCAAAGGCTTTGCAAAGTCTTTGTCTTTGAGAGCCTTTGAGCCTTTGATGGGTACCTTTGTGCTAAGGATTTTAAAAAGTAAACCTTTGAGCTACCTTTGAGAGCAAAGGCAAAAATCTAATTTTTTTATATTTTATATTCTATATATAACACTAATTTTTTCTTTCTAACATAGATAGAGATTATTTTTCTACATATTAAAGATATTTATATTTAATACCAGGATTAGTATACGCCCTACAACCTCCACTAGTTGAACTAAGTGATTTACTCAAATTAGAACTCTCTGAACT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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