SE0520066

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3031
  • Capsella rubella
  • SE0520066
  • Mutator
  • M9
  • scaffold_2:4823942-4824502
  • CAGTTAAAA
  • TTAAAATGGGAAAATAGCGAAAATTAACCTAGACTATTTGCTGGCAGTGTTTTTATACCCAAACTACGATATCCAGTAACTACCAACGTAAACTCACAAAAAATTCAAATTTTCAACATAAACTATATGAACTCAGCCAAAATCAACATATACTAAAACAGTGTTATGTAACTATTTA

Secondary structure and sequence

TSD    TIR
5'



3'
CAG    AAT           G         C                A                            A    C  C    G                 C         ACA            AC                      A    A      TG          AC     CGTGGCAGTGACGGAACATCAGAGTTGAGTAATATGACGTCGTTTCTTGAGTTTAGGGTTCTCAAATCAAAGAATTGCTAAAGCAAACACTCA
   TTAA   GGGAAAATAGC AAAATTAAC TAGACTATTTGCTGGC GTGTTTTTATACCCAAACTACGATATCC GTAA TA CAAC TAAACTCACAAAAAATT AAATTTTCA   TAAACTATATGA  TCAGCCAAAATCAACATATACT AAAC GTGTTA  TAACTATTTA  GACAC                                                                                             
   ||||   ||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |||| || |||| ||||||||||||||||| |||||||||   ||||||||||||  |||||||||||||||||||||| |||| ||||||  ||||||||||  |||||                                                                                              
   AATT   CCCTTTTATCG TTTTAGTTG GTCTGATAAACGACTG CATAAAAATATGGGTTTGATGCTATAGG CGTT AT GTTG ATTTGAGTGTTTTTTAA TTTGAGAGT   ATTTGATATACT  AGTCGGTTTTAGTTGTATATGG TTTG CATAAT  ATTGGTGAAT  CCGCT                                                                                             
CAA    GGC           A         T                G                            C    T  T    G                 -         GGG            GT                      C    C      CA          CG     ACTTAGTTGGCTGTGGCAGCGTTACTGCCCTGTAGCCCCAACTCATTTTGCTGCAACAAAGTACTCAAATCCCAAGAGCTTAACTTCTAAGCT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End