Plant MITE

SE0550068

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3033
Capsella rubella
SE0550068
PIF/harbinger
To24
scaffold_2:12865116-12865453
TAA
AGACCAACTCCAATG

Secondary structure and sequence

TSD TIR

5'

3'

TA   C           GTAAATCTTTTAA     ATG       TA      -----TTACAAAAACTAC     TT    CTAAA       --------------------GT       ATCTTTCCAATGGTAAAGTTTTTAATAAGTTACTAAACATTACATTTTAAATAATCACAAAATTTGT
  AGA CAACTCCAATG             CAAGT   TTGGTAA  TTCTAA                  AAAAA  GAAA     AACTTAT                      AAAATTT                                                                   
  ||| |||||||||||             |||||   |||||||  ||||||                  |||||  ||||     |||||||                      |||||||                                                                   T
  TCT GTTGAGGTTAC             GTTCA   AATCGTT  AAGATT                  TATTT  ATTT     TGTACAT                      GATTCTT                                                                   
AA   C           -------------     AAA       TA      CTTAATTTTTCTCTTTTT     --    ---TT       TATTCAATTCTTTATCAAAAAC       AAAAACTTTATCAAAGAATCTATGTACACAGATGAATACTAACTCACCTCCTTTTTTTCTTTTTTTT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550068

TAAGACCAACTCCAATGGTAAATCTTTTAACAAGTATGTTGGTAATATTCTAATTACAAAAACTACAAAAATTGAAACTAAAAACTTATGTAAAATTTATCTTTCCAATGGTAAAGTTTTTAATAAGTTACTAAACATTACATTTTAAATAATCACAAAATTTGTTTTTTTTTTCTTTTTTTCCTCCACTCAATCATAAGTAGACACATGTATCTAAGAAACTATTTCAAAAATTCTTAGCAAAAACTATTTCTTAACTTATTACATGTTTTTTATTTATTTTTTCTCTTTTTAATTCTTAGAAATTTGCTAAAAAACTTGCATTGGAGTTGCTCTAA

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