Plant MITE

SE0550071

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3036
Capsella rubella
SE0550071
PIF/harbinger
To27
scaffold_6:6981198-6981397
TTA
AGAGCATCATCAATGCA

Secondary structure and sequence

TSD TIR

5'

3'

TT   G    A        AGACTAT    ATTGATCTTATAATTTGTTTAATAATTTAATTGAAAACTGAGCCTCTTCTACCCATATTTTGTTCTTATATA
  AGA CATC TCAATGCA       TAAA                                                                        
  ||| |||| ||||||||       ||||                                                                        A
  TCT GTAG AGTTACGT       CGAG                                                                        
AT   G    G        -----GT    AATCTCGTAAGAATACAATTAAATCGTAATTTATTTTTAGTTTTAATGTGAATTTTGGATTCTATACCATAC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550071

TTAGAGCATCATCAATGCAAGACTATTAAAATTGATCTTATAATTTGTTTAATAATTTAATTGAAAACTGAGCCTCTTCTACCCATATTTTGTTCTTATATAACATACCATATCTTAGGTTTTAAGTGTAATTTTGATTTTTATTTAATGCTAAATTAACATAAGAATGCTCTAAGAGCTGTGCATTGAGGATGGTCTTA

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