SE0520073

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3038
  • Capsella rubella
  • SE0520073
  • Mutator
  • M8
  • scaffold_1:13678197-13678828
  • AAATCTTAA
  • GGGAAAAATGTCATAAAAATCCTGAACTTTCAAATTTGGGACGATTTAATCCTGAACTTTAAAGAAGTAATTTTAATCACAAAGTTTTGTTGATTTTTGGGTAAAATAGCTAAGTTTTATTGATTTCACTTATTTAAGCATGACATTTAATTTTTGTTAAAAACTTAAAGATGTAGTTAACTATATGTGAGCTGTTTTTGTT

Secondary structure and sequence

TSD    TIR
5'



3'
AAATCTTAAA                                                                    A                             GG                  A       CA  T             A    A     G  A   ACT        TA         A      C          TAGCCTAAATGACCATGTTTC      G              GAAAT   ----TT   TC    ATG  CCCGCACTATGGCAACAATTCAACAAGAAGTAAAGAAAATTTGTGGAT
          GGGAAAAATGTCATAAAAATCCTGAACTTTCAAATTTGGGACGATTTAATCCTGAACTTTAAAGAAGT ATTTTAATCACAAAGTTTTGTTGATTTTT  GTAAAATAGCTAAGTTTT TTGATTT  CT ATTTAAGCATGAC TTTA TTTTT TT AAA   TAAAGATG  GTTAACTAT TGTGAG TGTTTTTGTT                     TTAGAC ACAAAACGATGTTG     CGT      TCT  CTCC   GA                                                
          |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  |||||||||||||||||| |||||||  || ||||||||||||| |||| ||||| || |||   ||||||||  ||||||||| |||||| ||||||||||                     |||||| ||||||||||||||     |||      |||  ||||   ||                                                 
          CCCTTTTTACAGTATTTTTAGGGCTTGAAAGTTTAAACCCTGCTAAATTAGGGCTTGAAATTTCTTCA TAAAATTAGTGTTTCAAAACAACTGAAAA  CATTTTATCGATTCAAAA AACTGAA  GG TAAATTTGTGCTG AAAT AAAGA AA TTT   GTTTCTGC  TAATTGATA ACACTC ACGAAGACAA                     AGTTTG TGTTTTGCTGCAGC     GTA      CTT  ATTT   AG                                                
AAATTCTAAA                                                                    G                             GA                  C       TC  C             C    C     G  A   AAC        CC         G      A          ---------------------      G              AAATT   TGGTTT   TG    ---  GGTTTTAGCTAAGTATTAAGTGTTTAGATTGAGGGATTGGGATCTTTT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End