SE0520075

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3040
  • Capsella rubella
  • SE0520075
  • Mutator
  • M4
  • scaffold_4:265639-266186
  • GTATAAAAA
  • ATGGGAAAAATGTTATTTAAATCCCGAACTTACACATTTTGGACATTTTAATCCTCGATTTTCACTGTTGCCATTAATATCATAGAATTCTCGTTAGCGTTATTTTTAAATTACTATCTTCTGTTAACTGAGCTAGATTGAGCATGCCGTCAAATCAAATTCTCTAATAGACGAGTTAACAGCCGTTGTGGATCGTTAATCAATCTCTTTTAAGTCGAAAAATGAGAATCACAAGGACAAACGACGTCG

Secondary structure and sequence

TSD    TIR
5'



3'
GTATAAAA                        C                 A                   C     T        T        A                                      A                    C        C               C               GT                   T          A     G                       TGCTGCCTTAAACGAAA
        ATGGGAAAAATGTTATTTAAATCC GAACTTACACATTTTGG CATTTTAATCCTCGATTTT ACTGT GCCATTAA ATCATAGA TTCTCGTTAGCGTTATTTTTAAATTACTATCTTCTGTT ACTGAGCTAGATTGAGCATG CGTCAAAT AAATTCTCTAATAGA GAGTTAACAGCCGTT  GGATCGTTAATCAATCTCT TTAAGTCGAA AATGA AATCACAAGGACAAACGACGTCG                 
        |||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||  ||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||                  
        TGCCCTTTTTACAATAAATTTAGG CTTGAATGTGTAAAACC GTAAAATTAGGAGCTGAAA TGATA CGGTAATT TAGTATCT AAGAGCAATTGCAATAAAAATTTAGTGATAGAAGACAA TGACTCGATCTAACTTGTAC GTAGTTTA TTTAAGAGATTGTCT TTCAGTTGTTGGCAA  CCTAGCAATTAGTTAGAGA AATTCAGCTT TTACT TTAGTGTTCCTGTTTGCTGCAGC                 
TAAAAATA                        A                 G                   A     C        T        G                                      C                    A        T               T               AT                   C          C     A                       TAAACTCTTAAATCCGT

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End