SE0520076

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3041
  • Capsella rubella
  • SE0520076
  • Mutator
  • M8
  • scaffold_7:6274476-6275104
  • AATGTAAAA
  • TGGGAAAAATGTCATAAAAATCCCAAACTTTCAAATTTGAGACGATTTAATCCCGAACTTTAAAGAAGTCATTTTAATCACAAAGTTTTGTTGTCTTTTCCGTAAAATAGCTATGTTTTGTTGACTTAGCCGATTTAAACACGACGTTTA

Secondary structure and sequence

TSD    TIR
5'



3'
AATGTAAAA                       CA              A             C      T                T               T                   T             A  CG      A  C  C     -GTTTCTC      TTGCA    C G           C    GT      C   TCAA  C   AAACGACATCGTTTAACAAACTGATTAAACTAAATCCCAAAATCGATTCACAGTTCACAAATCTAACTCCCTAACCCTAGAAAAATCCACAAAT
         TGGGAAAAATGTCATAAAAATCC  AACTTTCAAATTTG GACGATTTAATCC GAACTT AAAGAAGTCATTTTAA CACAAAGTTTTGTTG CTTTTCCGTAAAATAGCTA GTTTTGTTGACTT GC  ATTTAA CA GA GTTTA        TTAAAA     AAGA G GGTTAACTGTC GTGA  TGCTTC GTT    AC ACA                                                                                              
         |||||||||||||||||||||||  |||||||||||||| ||||||||||||| |||||| |||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||| ||  |||||| || || |||||        ||||||     |||| | ||||||||||| ||||  |||||| |||    || |||                                                                                              T
         ACCCTTTTTACAGTATTTTTAGG  TTGAAAGTTTAAAC CTGCTAAATTAGG CTTGAA TTTCTTCAGTAAAATT GTGTTTCAAAACAAC GAAAAGGCATTTTATCGAT CAAAACAACTGAA TG  TAAATT GT CT TAAAT        AATTTT     TTCT C CCAATTGATAG CACT  ACGAAG CAA    AT CGG                                                                                              
TAAAATGTA                       AC              C             A      T                C               T                   T             G  AA      C  A  T     AAAAAAAC      TAAAC    A A           A    AT      A   ----  -   ATTTACTGGTATAAAGAATCTGCTGTTTTGCTGCAACCTTCAGCAAAAGAAGGGGTCCCTAGACGCGATACCGTTGTTAAGTTCTTCATTTCTC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End