SE0550082

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3047
  • Capsella rubella
  • SE0550082
  • PIF/harbinger
  • To3
  • scaffold_6:11516308-11516680
  • TTA
  • AGGGGGGTGTATTCAAAGT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT                   ----------A    TT   GA  --------      TATGATTTATAAATCCACTGTTATTCAAACATGAATTTTAAAAAGTCTCATGAAATTCACTGTTATTCAACTAATGATTTCAAAATCCACCTTAAAATCCACTGTTATTGAAAACAATTTGTGGATTTGGCTTTTAAT
  AGGGGGGTGTATTCAAAGT           GAAT  TAG  GA        TTTATG                                                                                                                                          
  |||||||||||||||||||           ||||  |||  ||        ||||||                                                                                                                                          G
  TCTCCCCACATAAGTTTTA           CCTA  AAC  TC        TCAAAA                                                                                                                                          
AT                   CTTTAACATTC    --   --  AAAATAAC      ATTTACTAAAACTACTAAAATCCCTTCAAGTATACTGAAAACATTTTAGGAAAGTTTAAAGTGGTTTTTGGTACCCTAAACCTAAAGACATAAAAATTGATTCCTTTAGGAGGGTTTAGGAGAGTTTAGGAGACTTTA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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