Plant MITE

SE0510086

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3051
Capsella rubella
SE0510086
Tc1/Mariner
St2
scaffold_8:5626099-5626349
TA
TACTCCACCTGTTTCATTTTAAGT

Secondary structure and sequence

TSD TIR

5'

3'

      AC        T       ---GATATTA  GTTACTACACACATGTTAAAAAAACATATAATTTCTTTTGGTTTTATAAAAACATCATTAAATTAAAGGAATTCAACCAATCACAAAATAA
TACTCC  CTGTTTCA TTTAAGT          AG                                                                                           
||||||  |||||||| |||||||          ||                                                                                            
ATGAGG  GACAAAGT AAATTCA          GG                                                                                           
      GA        T       ATGCAAAATC  GTTTTAAAAACAAAGTAAAATTCACTACAAAAGTTAAAGATACGTTTATAATTTATACAAATTATGAAAAACTGGTTAGTATAAAATGTAT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0510086

TACTCCACCTGTTTCATTTTAAGTGATATTAAGGTTACTACACACATGTTAAAAAAACATATAATTTCTTTTGGTTTTATAAAAACATCATTAAATTAAAGGAATTCAACCAATCACAAAATAATATGTAAAATATGATTGGTCAAAAAGTATTAAACATATTTAATATTTGCATAGAAATTGAAAACATCACTTAAAATGAAACAAAAATTTTGGGCTAAAACGTAACTTAAATTGAAACAGAGGGAGTA

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