SE0530087

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3052
  • Capsella rubella
  • SE0530087
  • hAT
  • Hat4
  • scaffold_3:12657951-12658164
  • TCTCACAC
  • CAGGGGCGGACCTA

Secondary structure and sequence

TSD    TIR
5'



3' 
TCTCACAC              CG    AGGTGGTGGTGGCAGCTGCCACCAGTAACCTACAAAACATTTAAAAAATTGGTTTGTTTGTAATAATCAATGTAGTAAAA
        CAGGGGCGGACCTA  TTGT                                                                                
        ||||||||||||||  ||||                                                                                 
        GTCCCCGCCTGGGT  CGGG                                                                                
CACACTCT              --    TTTTTAATTCACGCACGTTTCACTGTGAAAGTCCTAATCTTGAGTGGTAGAGAGTATATAATGTGTACAATTGTATTGGT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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