SE0550089

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3054
  • Capsella rubella
  • SE0550089
  • PIF/harbinger
  • To1
  • scaffold_7:11224576-11224999
  • TAA
  • AGGGGGAGTTATTGGGAGAATGATTTTTAAAGA

Secondary structure and sequence

TSD    TIR
5'



3' 
TA      A           A        T     TT    GAGTTTAAGATTCCATTGTTATTGGTTTATAGATTCTTAGATTCCTAATAAAATCTCTTGTTATTGGTGTATGTATTTTGTAATTCTATTTAAAATCCTTTGTTATTCAAAAAGTTGAGTATTTATTGATTTTCCAATTCTATCAAATTCTAGTGTTATTGGTTTAATGAT
  AGGGGG GTTATTGGGAG ATGATTTT AAAGA  TTTA                                                                                                                                                                           
  |||||| ||||||||||| |||||||| |||||  ||||                                                                                                                                                                           T
  TCCCCC CAATAACCCTC TACTAAAA TTTCT  AAAT                                                                                                                                                                           
AA      C           C        T     -C    ACCTAAAGATTTCAAATCTCTAAAATTCTAAGAGTTTTTTAAAACACCTAAGATTTTATTACAAATGGGTCTAAAGATCTCAAATTATCTAAGAAGTATACTATCTAAGATATTTATGAACACTCTTAACGTCATAAAACTTTCAACAAAAATTACTGATTTATACATTCC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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