SE0550092

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3057
  • Capsella rubella
  • SE0550092
  • PIF/harbinger
  • To29
  • scaffold_1:17067746-17068094
  • TGA
  • AGAGCATGTCCAATGCAAGTATGTTAGCAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TG   G   G        --    A   T     -----------------------A       G  GTAAAGGGTAAGAAAATAAATCAAAAATATATATTAACCTAAGAAAAATATCTTAGTTAGAAATTTTGATAAAAGTTTTTAGTGCAAGGTGTAGGCAATTGATTGGTTTGAGATTTGTAC
  AGA CAT TCCAATGC  AAGT TGT AGCAA                        TTTCTTA TT                                                                                                                        
  ||| ||| ||||||||  |||| ||| |||||                        ||||||| ||                                                                                                                         
  TCT GTA GGGTTACG  TTCA ACA TTGTT                        TTTTATA TA                                                                                                                        
AG   G   G        AT    -   T     CAAAAAATCGTAATAACATTAATA       -  TTCAATACTTCAATTCTTTAAAAACTTCTATTTTTCTTTGTATACGAAGGTTACCATTTCAAGATTTAAGTTTCGAAAATTTTAATATTAATTTTTTGAACGAAACTTTTGTTCAAACTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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