SE0520094

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3059
  • Capsella rubella
  • SE0520094
  • Mutator
  • M10
  • scaffold_1:12039311-12039683
  • AAAAAAAAA
  • AGAGAAATTCCCTAAGATGCCAT

Secondary structure and sequence

TSD    TIR
5'



3'
AAAAAAAA  A A     C  A         CATTT   TTTTTC              ----CAA    T     C        AACA     TTTC      -C             CA     G          A      --   TT TT       TG      --     TATT   A       TAT
        AG G AATTC CT AGATGCCAT     TAG      TTCCAAAAATACCA       TTTT TTTTC AAAAATAC    AAAAT    TTTTTC  AAAATACCATAAA  TAAAA TTGATTTTTT AGGTGT  AGA  T  TTTTTAA  TTTGGG  TTGAC    TAT TTTAGGG   
        || | ||||| || |||||||||     |||      ||||||||||||||       |||| ||||| ||||||||    |||||    ||||||  |||||||||||||  ||||| |||||||||| ||||||  |||  |  |||||||  ||||||  |||||    ||| |||||||    
        TC C TTAAG GA TTTATGGTA     ATC      AAGGTTTTTATGGT       AAAA AAAAG TTTTTATG    TTTTA    AAAAAG  TTTTATGGTGTTT  ATTTT GATTAAAAAA TTCGTA  TTT  A  AAAGATT  GGATTT  GATTG    ATG GGATTTT   
GAAAAAAA  C C     A  A         CTTTT   --CATA              AATATTC    T     A        GTAA     -TGT      AT             TG     -          A      AG   TT TT       TA      GT     --TT   G       TGA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End