SE0530099

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3064
  • Capsella rubella
  • SE0530099
  • hAT
  • Hat1
  • scaffold_14:92210-92824
  • ATGATAAC
  • TAGGCCTGGGCA

Secondary structure and sequence

TSD    TIR
5'



3' 
ATGATAAC   G        AAAAATC   -  CCGAAAATCCGAACCGGAACCGATCCGAAAAATTAGACCCGAATCCGAACCCGAAATTTTAGATTTACCCTATTGGGTCCTAAACTCCTCTACCCGAAAATCCGAATCCGAACCCGAACCGAACCCGAACCCGAAAATACCCGAAATATAAATGTATTTAAATAATTTAGGACCCGAATACCCGAGTTCTCTATTCAAATATCCGAATTTATACCCGAAATTCTGATTTTTACCCGAAAATCCCGGTAATTATAAATAAAATTTCTGAATTTTTA
        TAG CCTGGGCA       CGG AA                                                                                                                                                                                                                                                                                   
        ||| ||||||||       ||| ||                                                                                                                                                                                                                                                                                   T
        ATC GGACCCGT       ATG GC                                                                                                                                                                                                                                                                                   
CAATAGTA   G        -AAGCCT   A  CAAGCCCAAGCCCATTTTTGACAAGCCCAAGCCCAAAGAGCCCATCTCCTCAAATCCTGGGTTATCCCATTTGTATTTTTAAGCCAAGCCAAAGCCAAGCCCAGGTAAGCCCAAGCCCAGCCAAACCCATATTTAAAAGTCTTGGCAATTTTTAGGCTCTTAAAAAGCCCATGTGTTTATAGGCTTTTAAATGGGCTTATGGGCTTTTAAAAGCCCATTTAAAAGCCCAAAAGCCTGTTTATGGGTTTTAAAACCCATTTATGGGTCTAAAAACC
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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