SE0520102

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3067
  • Capsella rubella
  • SE0520102
  • Mutator
  • M9
  • scaffold_3:10939914-10940484
  • GTTATAGTC
  • TTATAGTCCGGAAAATAGCAAAAATCAATCC

Secondary structure and sequence

TSD    TIR
5'



3'
 G      T C                      AAACTT       A                              GA                 T       TT                                        C             -CGC                 T     A     CAA        A        T   AAC   TGT     C                -       A      C      CA    -----------AA   TA
  TTATAG C GGAAAATAGCAAAAATCAATCC      TTTGCTG CGGTATTTTTATACCCAAACTACGATATCC  CAAATAGCAACTTAAAC CACAAAA  TTCAAATTCTCAACCTAAACTATATGAAATCAGCCAAAAT AACATATATTAAA    TGTTAGTTAACCACTTA CGGCG TGAGT   TCGACACC TGGTAATG CGG   ATT   GTTGA TAATATGACGTCGTTT GTGAGTT AGGGTT TCGAAT  AAGA             TGC  
  |||||| | ||||||||||||||||||||||      ||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||| |||||||  |||||||||||||||||||||||||||||||||||||||| |||||||||||||    ||||||||||||||||| ||||| |||||   |||||||| |||||||| |||   |||   ||||| |||||||||||||||| ||||||| |||||| ||||||  ||||             |||   
  GATATT G CCTTTTATCGTTTTTAGTTGGG      AAATGAC GCCATAAAAGTATGGGTTTGATGCTATGGG  GTTTATCGTTGGATTTG GTGTTTT  AAGTTTAAGAGTTGGATTTGATATACTTTAGTCGGTTTTA TTGTATATAGTTT    ACGATCAATTGGTGAAT GCCGC ACTCA   GGCTGTGG ACCGTTAC GTC   TAG   CAACT ATTATACTGCAGCAAA CACTCAA TCCTAA AGTTTA  TTCT             ACG  
CT      - C                      GCTCAT       C                              GC                 T       -T                                        C             TACC                 T     G     ATC        C        T   CTA   TTT     C                G       A      -      AC    AAGCTACTCACAA   AA

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End