SE0550106

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3071
  • Capsella rubella
  • SE0550106
  • PIF/harbinger
  • To10
  • scaffold_5:12072985-12073123
  • TTA
  • AGGGCATCCTCATTGGGGGTATTTTAGGAGGCTAAGATACCCCCACTTTTCCAAAGAAA

Secondary structure and sequence

TSD    TIR
5'



3' 
TT   G                                              C        ATCCTTAT
  AGG CATCCTCATTGGGGGTATTTTAGGAGGCTAAGATACCCCCACTTTT CAAAGAAA        
  ||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||        A
  TCT GTAGGAGTAACCCCCATAGAATCCTCCGATTCTATGGGGGTGAAAA GTTTCTTT        
AT   G                                              A        CATACAAT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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