SE0550107

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3072
  • Capsella rubella
  • SE0550107
  • PIF/harbinger
  • To4
  • scaffold_3:5049248-5049478
  • AGG
  • G

Secondary structure and sequence

TSD    TIR
5'



3' 
  A  -  CATAA        CAAACAATTATATGAGATTTTGTCTCGAATATTTATATTGCTATAAAGGCTCCGAATGGTAACCATACCGCACTACAAAACCGCACCGCAACAGTGC
   GG AC     CTCAATAA                                                                                                 
   || ||     ||||||||                                                                                                 T
   CC AG     GCTTACCA                                                                                                 
AAA  C  -----        TTGACGCCAAAAGTGACGCCCTCTTCACGCCACGCCAAGTTTATCATCGCTTTTATATATCTATATATACATATACATCTATAAAACTGTGACAATG
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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