Plant MITE

SE0550109

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3074
Capsella rubella
SE0550109
PIF/harbinger
To31
scaffold_5:9971774-9972062
TAA
AGGGCATCTCCA

Secondary structure and sequence

TSD TIR

5'

3'

TA   G        -A   -    T  TTAGTGAGTTTCATAAGTTTATTGTGGACAAAAAATAAATCAAAATTGAACAATTAAATAGAGAGGAAACCTAAACTAAGGGGTTTTAGAAGTTGTGTTTAGGGGTACTTAAAGACACA
  AGG CATCTCCA  AGG GAGG GC                                                                                                                       
  ||| ||||||||  ||| |||| ||                                                                                                                        
  TCT GTGGAGGT  ACA TTTG AG                                                                                                                       
AA   G        AA   C    -  ATTATCCTACGAATTGTTGTAAAGTAATTATTTTTAACTAATTTATTTTTACAATCTCCCTCTTTCTTAATATCTTTCTCTTTCTCTACTTATATAAAAAATGGTTACTTATTAACGGT

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550109

TAAGGGCATCTCCAAAGGGAGGTGCTTAGTGAGTTTCATAAGTTTATTGTGGACAAAAAATAAATCAAAATTGAACAATTAAATAGAGAGGAAACCTAAACTAAGGGGTTTTAGAAGTTGTGTTTAGGGGTACTTAAAGACACATGGCAATTATTCATTGGTAAAAAATATATTCATCTCTTTCTCTTTCTATAATTCTTTCTCCCTCTAACATTTTTATTTAATCAATTTTTATTAATGAAATGTTGTTAAGCATCCTATTAGAGTTTCACAAATGGAGGTGGTCTAA

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