SE0540110

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3075
  • Capsella rubella
  • SE0540110
  • CACTA
  • Ca1
  • scaffold_2:3912971-3913145
  • ATA
  • CACTAGTAAAATAAATACATATAGCCACTTGGCAGTCG

Secondary structure and sequence

TSD    TIR
5'



3' 
ATA           T    ACA                 -  CG   ATTCGTGGCTATAAGGTGATTTTTTTAAAAACAGCCACAAG
   CACTAGTAAAA AAAT   TATAGCCACTTGGCAGT CG  AAA                                         
   ||||||||||| ||||   ||||||||||||||||| ||  |||                                         T
   GTGATCATTTT TTTA   ATATCGGTGAATCGTTA GC  CCG                                         
ATA           T    GAG                 A  -A   ACACGGAATTTTAAGCACTGATATCCCAGCATCGAATTTTT
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3