Plant MITE

SE0550115

Basic info.

MITE ID
Species
MITE identifier
Superfamily
Family
Genomic location
TSD
TIR

MITE_3080
Capsella rubella
SE0550115
PIF/harbinger
To32
scaffold_8:1784210-1784375
TAA
AGACCATGATTAT

Secondary structure and sequence

TSD TIR

5'

3'

TA   C   G     CAAG         AA  CT     C          A  GAT     --TTT     A  TTAA    TC
  AGA CAT ATTAT    GGGTTTTTA  AA  TCTTA GCTAAGAAAA GT   GAAAA     AAGAA AG    TATG  
  ||| ||| |||||    |||||||||  ||  ||||| |||||||||| ||   |||||     ||||| ||    ||||  T
  TCT GTA TAATA    TCCGAAAAT  TT  AGAAT CGATTTTTTT CA   CTTTT     TTCTT TC    ATGT  
AA   C   G     ACCA         CA  TT     C          -  ATT     CTACT     C  TAAG    TC

Get MITE sequence

MITE cluster

MITE ID	MITE identifier	Chr	Start	End
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12
Vca-MIR1168	PmiREN020835	PmiREN020834	MIR1168	Vca-scaffold_12

Closed gene

MITE ID	MITE identifier	Chr	Start	End

>SE0550115

TAAGACCATGATTATCAAGGGGTTTTTAAAAACTTCTTACGCTAAGAAAAAGTGATGAAAATTTAAGAAAAGTTAATATGTCTCTTGTAGAATCTCTTCTTTCATCTTTTCTTAACTTTTTTTAGCCTAAGATTTTACTAAAAGCCTACCAATAATGATGCTCTAA

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