SE0550116

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3081
  • Capsella rubella
  • SE0550116
  • PIF/harbinger
  • To33
  • scaffold_7:12249434-12249777
  • TAT
  • GGCCTTGAATGTTTAGTGGATTTTGGAAGAGATTTTGGTTTTTG

Secondary structure and sequence

TSD    TIR
5'



3' 
TAT    T      ---------------      GGA       -AG  A            TTATTCAAAACTCATTTTCAAACAAT     TTTTTAATTTTTGGATTCCCTAAAATTTAGTAAAACTATTTTGTTGTAATCTTCCATTCAAGATTTTAAATTTTAAAGTTTACTAAAATGTAGG
   GGCC TGAATG               TTTAGT   TTTTGGA   AG TTTTGGTTTTTG                          CAAGA                                                                                              
   |||| ||||||               ||||||   |||||||   || ||||||||||||                          |||||                                                                                              G
   CCGG ACTTAC               AAATCA   AAAACCT   TC AAAATCGAAAAC                          ATCAA                                                                                              
TAT    T      CTACGACAAAAAATT      ---       AAA  C            --------------TTAATATCTAAA     AGTCAAAAAAGATAATCAAAAAACATAAGTTTTAGGGTTTTTATACCGAAAACCAAAAACTCTTTTTATTGTATGTTTTTACTTTTTGATCTAA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

Copyright ©.   Contact us: contact@pmite.com   京ICP备2022028499号-3