SE0550117

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3082
  • Capsella rubella
  • SE0550117
  • PIF/harbinger
  • To34
  • scaffold_5:239537-239674
  • TTA
  • AGAGCATCCTCATTGCAAGGGTTGTTGCACAAATCTTAAGGTAAGATTTGTGAAGAAAAAAACTT

Secondary structure and sequence

TSD    TIR
5'



3' 
TT  AG                   G              AGG                   AA   AT
  AG  CATCCTCATTGCAAGGGTT TTGCACAAATCTTA   TAAGATTTGTGAAGAAAAA  CTT  
  ||  ||||||||||||||||||| ||||||||||||||   |||||||||||||||||||  |||   
  TC  GTAGGAGTAACGTTCCCAA AACGTGTTTAGAAT   ATTCTAAACACTTCTTTTT  GAA  
AT  CA                   G              GGA                   AG   TA
Get MITE sequence

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End

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