SE4520002

Basic info.

  • MITE ID
  • Species
  • MITE identifier
  • Superfamily
  • Family
  • Genomic location
  • TSD
  • TIR
  • MITE_3090
  • Cannabis sativa
  • SE4520002
  • Mutator
  • M1
  • scaffold27819:12626-13016
  • TATATTATA
  • TATATTATAGGGTAAATACCATTTTAGACCCTGTGTTTTGCAAAAGTTACAGATTGGACCCTGTGTTTTGTTAAATGACAAAATGGACCCTGTATTTTCTAAAATAGTAAAAATAGGACCCTGAA

Secondary structure and sequence

TSD    TIR
5'



3'
    T                    A      G                 A                                                          A               CTTAA      A   CTTTTTT      --ACAA  AAC     --------     T   TAA   GAATAGAT
TATA TATAGGGTAAATACCATTTT GACCCT TGTTTTGCAAAAGTTAC GATTGGACCCTGTGTTTTGTTAAATGACAAAATGGACCCTGTATTTTCTAAAATAGTA AAATAGGACCCTGAA     TTTTTG CAA       TTTAAT      CC   TTGAA        GACAA ACT   TAC        
|||| |||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||     |||||| |||       ||||||      ||   |||||        ||||| |||   |||        A
ATAT ATATCCCATTTATGGTAAAA CTGGGA ACAAAATGTTTTCAATG TTAACCTGGGACACAAAACAATTTACTGTTTTACCTGGGACATAAAAGATTTTATCAT TTTATCCTGGGACTT     AAAAAC GTT       AAATTA      GG   GATTT        CTGTT TGA   ATG        
    T                    C      G                 G                                                          G               AACTA      A   TTATTTC      ATATTA  CTA     TCACGATA     T   CAA   TAAAAAAC

MITE cluster

MITE ID MITE identifier Chr Start End
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12
Vca-MIR1168 PmiREN020835 PmiREN020834 MIR1168 Vca-scaffold_12

Closed gene

MITE ID MITE identifier Chr Start End